Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.31■□□□□ 0.52
Cdk9Q99J95 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdk9Q99J95 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.3■□□□□ 0.52
Cdk9Q99J95 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.3■□□□□ 0.52
Cdk9Q99J95 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.3■□□□□ 0.52
Cdk9Q99J95 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdk9Q99J95 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Gm45417-201ENSMUST00000209533 758 ntBASIC18.29■□□□□ 0.52
Cdk9Q99J95 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdk9Q99J95 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdk9Q99J95 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.27■□□□□ 0.52
Cdk9Q99J95 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.27■□□□□ 0.52
Cdk9Q99J95 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdk9Q99J95 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Cdk9Q99J95 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Cdk9Q99J95 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Cdk9Q99J95 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdk9Q99J95 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdk9Q99J95 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdk9Q99J95 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdk9Q99J95 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdk9Q99J95 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Cdk9Q99J95 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdk9Q99J95 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdk9Q99J95 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.26■□□□□ 0.51
Cdk9Q99J95 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
Cdk9Q99J95 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdk9Q99J95 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.25■□□□□ 0.51
Cdk9Q99J95 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdk9Q99J95 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.24■□□□□ 0.51
Cdk9Q99J95 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdk9Q99J95 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms