Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.4■□□□□ 0.86
Ushbp1Q8R370 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Ushbp1Q8R370 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Ushbp1Q8R370 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ushbp1Q8R370 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Mir6982-201ENSMUST00000184354 68 ntBASIC20.38■□□□□ 0.85
Ushbp1Q8R370 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ushbp1Q8R370 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.37■□□□□ 0.85
Ushbp1Q8R370 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ushbp1Q8R370 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Ushbp1Q8R370 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ushbp1Q8R370 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Ushbp1Q8R370 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.33■□□□□ 0.85
Ushbp1Q8R370 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.33■□□□□ 0.85
Ushbp1Q8R370 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ushbp1Q8R370 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ushbp1Q8R370 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
Ushbp1Q8R370 Grk6-206ENSMUST00000224995 2971 ntBASIC20.33■□□□□ 0.84
Ushbp1Q8R370 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ushbp1Q8R370 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ushbp1Q8R370 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ushbp1Q8R370 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms