Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim47Q8C0E3 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Gm38285-201ENSMUST00000192928 922 ntBASIC20.15■□□□□ 0.82
Trim47Q8C0E3 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim47Q8C0E3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trim47Q8C0E3 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim47Q8C0E3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim47Q8C0E3 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim47Q8C0E3 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim47Q8C0E3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Trim47Q8C0E3 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Gm13158-201ENSMUST00000122007 736 ntBASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim47Q8C0E3 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim47Q8C0E3 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim47Q8C0E3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms