Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Gm12527-201ENSMUST00000117967 564 ntBASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Smarca1Q6PGB8 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarca1Q6PGB8 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Gm20760-201ENSMUST00000179197 648 ntBASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Gm20049-201ENSMUST00000219950 730 ntBASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Smarca1Q6PGB8 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarca1Q6PGB8 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Smarca1Q6PGB8 Gm10653-202ENSMUST00000139570 835 ntBASIC20.22■□□□□ 0.83
Smarca1Q6PGB8 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarca1Q6PGB8 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarca1Q6PGB8 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarca1Q6PGB8 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smarca1Q6PGB8 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Smarca1Q6PGB8 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Smarca1Q6PGB8 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Smarca1Q6PGB8 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Smarca1Q6PGB8 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms