Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Sh3rf1Q69ZI1 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Sh3rf1Q69ZI1 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Sh3rf1Q69ZI1 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sh3rf1Q69ZI1 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sh3rf1Q69ZI1 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
Sh3rf1Q69ZI1 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Mir5133-201ENSMUST00000174955 77 ntBASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sh3rf1Q69ZI1 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sh3rf1Q69ZI1 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms