Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
ShhQ62226 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ShhQ62226 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ShhQ62226 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ShhQ62226 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Gm9885-202ENSMUST00000186234 2209 ntBASIC16.91■□□□□ 0.3
ShhQ62226 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ShhQ62226 Gm15565-201ENSMUST00000118890 427 ntBASIC16.91■□□□□ 0.3
ShhQ62226 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.91■□□□□ 0.3
ShhQ62226 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ShhQ62226 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ShhQ62226 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC16.9■□□□□ 0.3
ShhQ62226 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.9■□□□□ 0.3
ShhQ62226 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.9■□□□□ 0.3
ShhQ62226 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ShhQ62226 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ShhQ62226 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ShhQ62226 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ShhQ62226 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.89■□□□□ 0.29
ShhQ62226 Gm26971-201ENSMUST00000182423 1072 ntBASIC16.89■□□□□ 0.29
ShhQ62226 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.89■□□□□ 0.29
ShhQ62226 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC16.89■□□□□ 0.29
ShhQ62226 AC122335.2-201ENSMUST00000213901 6181 ntBASIC16.89■□□□□ 0.29
ShhQ62226 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ShhQ62226 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ShhQ62226 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ShhQ62226 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ShhQ62226 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
ShhQ62226 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ShhQ62226 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.88■□□□□ 0.29
ShhQ62226 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ShhQ62226 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC16.87■□□□□ 0.29
ShhQ62226 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ShhQ62226 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC16.87■□□□□ 0.29
ShhQ62226 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
ShhQ62226 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms