Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Col11a1Q61245 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col11a1Q61245 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col11a1Q61245 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.59■□□□□ 0.89
Col11a1Q61245 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col11a1Q61245 Gm5587-201ENSMUST00000206270 674 ntBASIC20.59■□□□□ 0.89
Col11a1Q61245 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col11a1Q61245 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col11a1Q61245 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col11a1Q61245 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col11a1Q61245 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col11a1Q61245 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col11a1Q61245 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col11a1Q61245 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col11a1Q61245 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col11a1Q61245 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col11a1Q61245 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.57■□□□□ 0.88
Col11a1Q61245 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Col11a1Q61245 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Col11a1Q61245 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col11a1Q61245 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Col11a1Q61245 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.56■□□□□ 0.88
Col11a1Q61245 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col11a1Q61245 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col11a1Q61245 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col11a1Q61245 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col11a1Q61245 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col11a1Q61245 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Col11a1Q61245 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col11a1Q61245 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col11a1Q61245 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col11a1Q61245 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.56■□□□□ 0.88
Col11a1Q61245 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Col11a1Q61245 Gm9013-201ENSMUST00000132939 882 ntBASIC20.55■□□□□ 0.88
Col11a1Q61245 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC20.55■□□□□ 0.88
Col11a1Q61245 Gm7153-201ENSMUST00000117092 455 ntBASIC20.55■□□□□ 0.88
Col11a1Q61245 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.55■□□□□ 0.88
Col11a1Q61245 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col11a1Q61245 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col11a1Q61245 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.54■□□□□ 0.88
Col11a1Q61245 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Col11a1Q61245 Gm27704-201ENSMUST00000185094 107 ntBASIC20.54■□□□□ 0.88
Col11a1Q61245 AC133598.3-202ENSMUST00000224219 531 ntBASIC20.54■□□□□ 0.88
Col11a1Q61245 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col11a1Q61245 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col11a1Q61245 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col11a1Q61245 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Col11a1Q61245 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col11a1Q61245 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col11a1Q61245 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col11a1Q61245 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC20.53■□□□□ 0.88
Col11a1Q61245 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col11a1Q61245 Gm4974-201ENSMUST00000209974 875 ntBASIC20.52■□□□□ 0.88
Col11a1Q61245 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col11a1Q61245 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Col11a1Q61245 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Gm25016-201ENSMUST00000158399 131 ntBASIC20.51■□□□□ 0.87
Col11a1Q61245 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Col11a1Q61245 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col11a1Q61245 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.5■□□□□ 0.87
Col11a1Q61245 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms