Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Mir2861-201ENSMUST00000175539 82 ntBASIC20.06■□□□□ 0.8
Cln3Q61124 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cln3Q61124 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cln3Q61124 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cln3Q61124 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.06■□□□□ 0.8
Cln3Q61124 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Cln3Q61124 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Cln3Q61124 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.05■□□□□ 0.8
Cln3Q61124 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
Cln3Q61124 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC20.05■□□□□ 0.8
Cln3Q61124 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.05■□□□□ 0.8
Cln3Q61124 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC20.05■□□□□ 0.8
Cln3Q61124 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC20.05■□□□□ 0.8
Cln3Q61124 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC20.05■□□□□ 0.8
Cln3Q61124 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.05■□□□□ 0.8
Cln3Q61124 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC20.05■□□□□ 0.8
Cln3Q61124 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Cln3Q61124 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Cln3Q61124 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cln3Q61124 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.04■□□□□ 0.8
Cln3Q61124 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Cln3Q61124 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.04■□□□□ 0.8
Cln3Q61124 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cln3Q61124 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.03■□□□□ 0.8
Cln3Q61124 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Cln3Q61124 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.03■□□□□ 0.8
Cln3Q61124 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
Cln3Q61124 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cln3Q61124 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Cln3Q61124 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.02■□□□□ 0.8
Cln3Q61124 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Cln3Q61124 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cln3Q61124 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cln3Q61124 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Cln3Q61124 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Cln3Q61124 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC20.01■□□□□ 0.79
Cln3Q61124 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.01■□□□□ 0.79
Cln3Q61124 Gm6659-201ENSMUST00000174752 547 ntBASIC20.01■□□□□ 0.79
Cln3Q61124 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC20.01■□□□□ 0.79
Cln3Q61124 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Cln3Q61124 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cln3Q61124 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cln3Q61124 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cln3Q61124 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cln3Q61124 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC20■□□□□ 0.79
Cln3Q61124 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cln3Q61124 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cln3Q61124 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20■□□□□ 0.79
Cln3Q61124 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cln3Q61124 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Cln3Q61124 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cln3Q61124 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Cln3Q61124 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.99■□□□□ 0.79
Cln3Q61124 Gm12085-201ENSMUST00000119263 940 ntBASIC19.99■□□□□ 0.79
Cln3Q61124 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.99■□□□□ 0.79
Cln3Q61124 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cln3Q61124 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cln3Q61124 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Cln3Q61124 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cln3Q61124 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Cln3Q61124 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Cln3Q61124 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms