Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rnf40Q3U319 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Gm43566-201ENSMUST00000196851 808 ntBASIC18.85■□□□□ 0.61
Rnf40Q3U319 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rnf40Q3U319 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rnf40Q3U319 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
Rnf40Q3U319 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf40Q3U319 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf40Q3U319 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rnf40Q3U319 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.83■□□□□ 0.6
Rnf40Q3U319 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Rnf40Q3U319 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rnf40Q3U319 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.81■□□□□ 0.6
Rnf40Q3U319 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.81■□□□□ 0.6
Rnf40Q3U319 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.81■□□□□ 0.6
Rnf40Q3U319 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.81■□□□□ 0.6
Rnf40Q3U319 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rnf40Q3U319 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
Rnf40Q3U319 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms