Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.63■□□□□ 0.57
Sox1P53783 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.63■□□□□ 0.57
Sox1P53783 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sox1P53783 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sox1P53783 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sox1P53783 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Sox1P53783 Gm9013-201ENSMUST00000132939 882 ntBASIC18.62■□□□□ 0.57
Sox1P53783 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Sox1P53783 Gm38027-201ENSMUST00000192315 235 ntBASIC18.62■□□□□ 0.57
Sox1P53783 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.62■□□□□ 0.57
Sox1P53783 Gm5864-201ENSMUST00000202263 970 ntBASIC18.62■□□□□ 0.57
Sox1P53783 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC18.62■□□□□ 0.57
Sox1P53783 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.62■□□□□ 0.57
Sox1P53783 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sox1P53783 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sox1P53783 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sox1P53783 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sox1P53783 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sox1P53783 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.61■□□□□ 0.57
Sox1P53783 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.61■□□□□ 0.57
Sox1P53783 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Sox1P53783 Gm27357-201ENSMUST00000183754 135 ntBASIC18.61■□□□□ 0.57
Sox1P53783 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Sox1P53783 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC18.61■□□□□ 0.57
Sox1P53783 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sox1P53783 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sox1P53783 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Sox1P53783 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
Sox1P53783 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 Gm7063-201ENSMUST00000186840 981 ntBASIC18.6■□□□□ 0.57
Sox1P53783 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.6■□□□□ 0.57
Sox1P53783 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Sox1P53783 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Sox1P53783 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.6■□□□□ 0.57
Sox1P53783 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.6■□□□□ 0.57
Sox1P53783 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Sox1P53783 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.59■□□□□ 0.57
Sox1P53783 Gm43073-201ENSMUST00000198200 1189 ntBASIC18.59■□□□□ 0.57
Sox1P53783 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.59■□□□□ 0.57
Sox1P53783 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Sox1P53783 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.58■□□□□ 0.57
Sox1P53783 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Sox1P53783 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Sox1P53783 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Sox1P53783 Gm16061-201ENSMUST00000122167 857 ntBASIC18.58■□□□□ 0.56
Sox1P53783 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.58■□□□□ 0.56
Sox1P53783 Mir6349-201ENSMUST00000184059 97 ntBASIC18.58■□□□□ 0.56
Sox1P53783 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sox1P53783 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Sox1P53783 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sox1P53783 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sox1P53783 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Sox1P53783 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Sox1P53783 Gm13884-201ENSMUST00000118103 829 ntBASIC18.57■□□□□ 0.56
Sox1P53783 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Sox1P53783 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Sox1P53783 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.57■□□□□ 0.56
Sox1P53783 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Sox1P53783 Gm38285-201ENSMUST00000192928 922 ntBASIC18.57■□□□□ 0.56
Sox1P53783 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC18.57■□□□□ 0.56
Sox1P53783 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Sox1P53783 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
Sox1P53783 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Sox1P53783 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms