Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.26■□□□□ 0.67
Shmt1P50431 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Shmt1P50431 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.25■□□□□ 0.67
Shmt1P50431 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Shmt1P50431 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Shmt1P50431 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Flg-201ENSMUST00000050758 1488 ntBASIC19.25■□□□□ 0.67
Shmt1P50431 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
Shmt1P50431 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Mtag2-201ENSMUST00000058665 714 ntBASIC19.25■□□□□ 0.67
Shmt1P50431 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Shmt1P50431 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.25■□□□□ 0.67
Shmt1P50431 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shmt1P50431 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.25■□□□□ 0.67
Shmt1P50431 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Gm10252-201ENSMUST00000209541 832 ntBASIC19.24■□□□□ 0.67
Shmt1P50431 Zfp783-201ENSMUST00000095946 670 ntBASIC19.24■□□□□ 0.67
Shmt1P50431 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Shmt1P50431 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shmt1P50431 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.24■□□□□ 0.67
Shmt1P50431 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Shmt1P50431 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.23■□□□□ 0.67
Shmt1P50431 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.23■□□□□ 0.67
Shmt1P50431 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.23■□□□□ 0.67
Shmt1P50431 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.23■□□□□ 0.67
Shmt1P50431 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.23■□□□□ 0.67
Shmt1P50431 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Shmt1P50431 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shmt1P50431 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.22■□□□□ 0.67
Shmt1P50431 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC19.22■□□□□ 0.67
Shmt1P50431 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Shmt1P50431 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.22■□□□□ 0.67
Shmt1P50431 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
Shmt1P50431 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shmt1P50431 Dmtn-210ENSMUST00000228824 2377 ntBASIC19.21■□□□□ 0.67
Shmt1P50431 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Shmt1P50431 Gm5643-201ENSMUST00000117081 966 ntBASIC19.21■□□□□ 0.67
Shmt1P50431 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.21■□□□□ 0.67
Shmt1P50431 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Shmt1P50431 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shmt1P50431 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.21■□□□□ 0.67
Shmt1P50431 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Shmt1P50431 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.2■□□□□ 0.66
Shmt1P50431 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Shmt1P50431 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Shmt1P50431 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Shmt1P50431 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms