Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Msx1P13297 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Msx1P13297 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.24■□□□□ 0.35
Msx1P13297 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.24■□□□□ 0.35
Msx1P13297 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.24■□□□□ 0.35
Msx1P13297 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Msx1P13297 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Msx1P13297 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Msx1P13297 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Msx1P13297 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.23■□□□□ 0.35
Msx1P13297 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.23■□□□□ 0.35
Msx1P13297 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.23■□□□□ 0.35
Msx1P13297 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Msx1P13297 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Msx1P13297 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.22■□□□□ 0.35
Msx1P13297 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Msx1P13297 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.22■□□□□ 0.35
Msx1P13297 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.22■□□□□ 0.35
Msx1P13297 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Msx1P13297 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
Msx1P13297 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.21■□□□□ 0.35
Msx1P13297 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.21■□□□□ 0.35
Msx1P13297 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Msx1P13297 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Msx1P13297 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Msx1P13297 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.21■□□□□ 0.34
Msx1P13297 Gm5112-201ENSMUST00000204407 2368 ntBASIC17.21■□□□□ 0.34
Msx1P13297 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.2■□□□□ 0.34
Msx1P13297 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.2■□□□□ 0.34
Msx1P13297 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.2■□□□□ 0.34
Msx1P13297 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.2■□□□□ 0.34
Msx1P13297 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Msx1P13297 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.2■□□□□ 0.34
Msx1P13297 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.2■□□□□ 0.34
Msx1P13297 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.2■□□□□ 0.34
Msx1P13297 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Dio3-201ENSMUST00000097228 1449 ntBASIC17.2■□□□□ 0.34
Msx1P13297 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Msx1P13297 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.19■□□□□ 0.34
Msx1P13297 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms