Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RaraP11416 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RaraP11416 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RaraP11416 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RaraP11416 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RaraP11416 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RaraP11416 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RaraP11416 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RaraP11416 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.65■□□□□ 0.74
RaraP11416 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RaraP11416 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RaraP11416 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.64■□□□□ 0.74
RaraP11416 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RaraP11416 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RaraP11416 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RaraP11416 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RaraP11416 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
RaraP11416 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.64■□□□□ 0.73
RaraP11416 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RaraP11416 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RaraP11416 Gm6420-201ENSMUST00000193885 723 ntBASIC19.64■□□□□ 0.73
RaraP11416 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.64■□□□□ 0.73
RaraP11416 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RaraP11416 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RaraP11416 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.64■□□□□ 0.73
RaraP11416 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.64■□□□□ 0.73
RaraP11416 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RaraP11416 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RaraP11416 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.64■□□□□ 0.73
RaraP11416 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RaraP11416 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.63■□□□□ 0.73
RaraP11416 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
RaraP11416 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RaraP11416 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RaraP11416 Gm42778-201ENSMUST00000199644 553 ntBASIC19.63■□□□□ 0.73
RaraP11416 Gm10493-201ENSMUST00000097270 612 ntBASIC19.63■□□□□ 0.73
RaraP11416 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.63■□□□□ 0.73
RaraP11416 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RaraP11416 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.62■□□□□ 0.73
RaraP11416 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Nespas-201ENSMUST00000143738 1083 ntBASIC19.62■□□□□ 0.73
RaraP11416 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RaraP11416 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.62■□□□□ 0.73
RaraP11416 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RaraP11416 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RaraP11416 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RaraP11416 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RaraP11416 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.61■□□□□ 0.73
RaraP11416 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.61■□□□□ 0.73
RaraP11416 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.61■□□□□ 0.73
RaraP11416 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.61■□□□□ 0.73
RaraP11416 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
RaraP11416 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RaraP11416 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RaraP11416 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
RaraP11416 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
RaraP11416 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.6■□□□□ 0.73
RaraP11416 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
RaraP11416 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.6■□□□□ 0.73
RaraP11416 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.6■□□□□ 0.73
RaraP11416 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.6■□□□□ 0.73
RaraP11416 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.6■□□□□ 0.73
RaraP11416 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms