Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.15■□□□□ 0.34
Lire1P11260 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Lire1P11260 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
Lire1P11260 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.14■□□□□ 0.33
Lire1P11260 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.14■□□□□ 0.33
Lire1P11260 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Lire1P11260 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.14■□□□□ 0.33
Lire1P11260 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Lire1P11260 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lire1P11260 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Lire1P11260 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Lire1P11260 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Lire1P11260 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Lire1P11260 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Lire1P11260 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lire1P11260 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.13■□□□□ 0.33
Lire1P11260 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lire1P11260 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lire1P11260 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lire1P11260 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Lire1P11260 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Lire1P11260 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Lire1P11260 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lire1P11260 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lire1P11260 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lire1P11260 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lire1P11260 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Lire1P11260 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Lire1P11260 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.12■□□□□ 0.33
Lire1P11260 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lire1P11260 Reep4-203ENSMUST00000226563 1444 ntBASIC17.12■□□□□ 0.33
Lire1P11260 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.12■□□□□ 0.33
Lire1P11260 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lire1P11260 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.11■□□□□ 0.33
Lire1P11260 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.11■□□□□ 0.33
Lire1P11260 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.11■□□□□ 0.33
Lire1P11260 Gm7514-201ENSMUST00000209475 934 ntBASIC17.11■□□□□ 0.33
Lire1P11260 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.11■□□□□ 0.33
Lire1P11260 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Lire1P11260 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lire1P11260 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lire1P11260 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lire1P11260 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.1■□□□□ 0.33
Lire1P11260 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Lire1P11260 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Lire1P11260 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Lire1P11260 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Gm12441-201ENSMUST00000121806 588 ntBASIC17.1■□□□□ 0.33
Lire1P11260 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.1■□□□□ 0.33
Lire1P11260 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.1■□□□□ 0.33
Lire1P11260 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.1■□□□□ 0.33
Lire1P11260 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.1■□□□□ 0.33
Lire1P11260 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Lire1P11260 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lire1P11260 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.1■□□□□ 0.33
Lire1P11260 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.09■□□□□ 0.33
Lire1P11260 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.09■□□□□ 0.33
Lire1P11260 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Lire1P11260 AA386476-201ENSMUST00000098781 1665 ntBASIC17.09■□□□□ 0.33
Lire1P11260 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lire1P11260 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms