Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC21.42■■□□□ 1.02
Col1a1P11087 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col1a1P11087 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col1a1P11087 Gm12085-201ENSMUST00000119263 940 ntBASIC21.42■■□□□ 1.02
Col1a1P11087 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Col1a1P11087 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col1a1P11087 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col1a1P11087 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col1a1P11087 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col1a1P11087 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Col1a1P11087 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col1a1P11087 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC21.41■■□□□ 1.02
Col1a1P11087 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
Col1a1P11087 Gm2274-201ENSMUST00000184539 609 ntBASIC21.41■■□□□ 1.02
Col1a1P11087 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col1a1P11087 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.41■■□□□ 1.02
Col1a1P11087 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC21.41■■□□□ 1.02
Col1a1P11087 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Col1a1P11087 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col1a1P11087 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Gm9103-201ENSMUST00000119371 405 ntBASIC21.4■■□□□ 1.02
Col1a1P11087 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC21.4■■□□□ 1.02
Col1a1P11087 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Col1a1P11087 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col1a1P11087 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col1a1P11087 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col1a1P11087 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.39■■□□□ 1.02
Col1a1P11087 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Col1a1P11087 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Col1a1P11087 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.01
Col1a1P11087 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
Col1a1P11087 Gm14859-201ENSMUST00000117752 357 ntBASIC21.39■■□□□ 1.01
Col1a1P11087 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC21.39■■□□□ 1.01
Col1a1P11087 Ank2-226ENSMUST00000189368 339 ntBASIC21.39■■□□□ 1.01
Col1a1P11087 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC21.39■■□□□ 1.01
Col1a1P11087 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col1a1P11087 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col1a1P11087 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col1a1P11087 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col1a1P11087 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Col1a1P11087 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Col1a1P11087 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Col1a1P11087 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Col1a1P11087 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Col1a1P11087 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC21.37■■□□□ 1.01
Col1a1P11087 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Col1a1P11087 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC21.37■■□□□ 1.01
Col1a1P11087 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col1a1P11087 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col1a1P11087 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Col1a1P11087 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col1a1P11087 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col1a1P11087 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Col1a1P11087 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col1a1P11087 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col1a1P11087 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC21.36■■□□□ 1.01
Col1a1P11087 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.36■■□□□ 1.01
Col1a1P11087 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col1a1P11087 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Col1a1P11087 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.35■■□□□ 1.01
Col1a1P11087 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Col1a1P11087 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Col1a1P11087 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 Gm22697-201ENSMUST00000175194 63 ntBASIC21.35■■□□□ 1.01
Col1a1P11087 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Col1a1P11087 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col1a1P11087 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms