Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Gm10812-201ENSMUST00000099864 546 ntBASIC14.11□□□□□ -0.15
Hoxd3P09027 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Hoxd3P09027 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Hoxd3P09027 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Hoxd3P09027 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC14.1□□□□□ -0.15
Hoxd3P09027 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC14.1□□□□□ -0.15
Hoxd3P09027 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Hoxd3P09027 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC14.09□□□□□ -0.15
Hoxd3P09027 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Hoxd3P09027 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Hoxd3P09027 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Hoxd3P09027 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC14.09□□□□□ -0.15
Hoxd3P09027 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC14.09□□□□□ -0.15
Hoxd3P09027 Gm11249-201ENSMUST00000117071 859 ntBASIC14.09□□□□□ -0.15
Hoxd3P09027 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Flg-201ENSMUST00000050758 1488 ntBASIC14.09□□□□□ -0.15
Hoxd3P09027 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Hoxd3P09027 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Hoxd3P09027 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Hoxd3P09027 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC14.08□□□□□ -0.16
Hoxd3P09027 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.08□□□□□ -0.16
Hoxd3P09027 Gm18666-201ENSMUST00000190039 958 ntBASIC14.08□□□□□ -0.16
Hoxd3P09027 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC14.08□□□□□ -0.16
Hoxd3P09027 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC14.08□□□□□ -0.16
Hoxd3P09027 AC107452.1-201ENSMUST00000227963 481 ntBASIC14.08□□□□□ -0.16
Hoxd3P09027 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Hoxd3P09027 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Hoxd3P09027 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Wnt10b-205ENSMUST00000226846 1204 ntBASIC14.07□□□□□ -0.16
Hoxd3P09027 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Hoxd3P09027 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Hoxd3P09027 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Hoxd3P09027 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Hoxd3P09027 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Gm5643-201ENSMUST00000117081 966 ntBASIC14.06□□□□□ -0.16
Hoxd3P09027 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Hoxd3P09027 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms