Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Gm45102-201ENSMUST00000207427 857 ntBASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Gm12922-201ENSMUST00000120626 809 ntBASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Gm7160-202ENSMUST00000188519 1027 ntBASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Rps24-207ENSMUST00000224568 714 ntBASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Spcs1-204ENSMUST00000226782 949 ntBASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Trav11A0A0B4J1J9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Gm7860-201ENSMUST00000121190 879 ntBASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Gm45906-201ENSMUST00000208911 1430 ntBASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC12.5□□□□□ -0.41
Trav11A0A0B4J1J9 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav11A0A0B4J1J9 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav11A0A0B4J1J9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms