Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm43187-201ENSMUST00000200652 2397 ntBASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 AC139350.2-201ENSMUST00000226508 2331 ntBASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 Gm21846-201ENSMUST00000179257 3073 ntBASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 Gm6811-201ENSMUST00000169389 1533 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 AC122024.1-201ENSMUST00000219276 4850 ntBASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 Adam28-203ENSMUST00000224039 2638 ntAPPRIS ALT2 BASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 Svs2-202ENSMUST00000109374 1479 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
Upf3bQ3ULL6 5330413P13Rik-203ENSMUST00000150466 2173 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm37755-201ENSMUST00000195880 2179 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm14635-202ENSMUST00000146535 1409 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm26981-201ENSMUST00000182453 3169 ntTSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 St18-212ENSMUST00000151281 3533 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Zfp748-202ENSMUST00000181892 5293 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm42763-201ENSMUST00000199595 2087 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 AY512931-201ENSMUST00000139751 2395 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Golga3-202ENSMUST00000112512 8132 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Sell-203ENSMUST00000192047 5703 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm37902-201ENSMUST00000192839 1683 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Vmn1r90-208ENSMUST00000227788 7018 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Nat8f2-201ENSMUST00000045008 3301 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Olfr976-204ENSMUST00000217630 2952 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm43335-201ENSMUST00000198299 3276 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Fam47c-201ENSMUST00000105110 1639 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm38077-201ENSMUST00000193657 3245 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Zfp874a-202ENSMUST00000075255 3238 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm26079-201ENSMUST00000104066 133 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm7821-201ENSMUST00000117111 788 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm11833-201ENSMUST00000118393 853 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Apc-ps1-201ENSMUST00000119356 470 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm4911-201ENSMUST00000119388 945 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm12518-201ENSMUST00000122075 779 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm11434-201ENSMUST00000122379 629 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm15322-201ENSMUST00000142621 739 ntTSL 2 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm16343-201ENSMUST00000162027 410 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm20432-201ENSMUST00000173716 250 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Nlrc3-204ENSMUST00000180200 3842 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gtpbp4-ps3-201ENSMUST00000184093 136 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm29353-201ENSMUST00000185801 620 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm43160-201ENSMUST00000196453 421 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 1700094M23Rik-201ENSMUST00000197695 695 ntTSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm8479-201ENSMUST00000203825 718 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm44386-201ENSMUST00000204288 429 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm44911-201ENSMUST00000208436 1062 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 AL929555.1-201ENSMUST00000215283 509 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 AC163661.1-201ENSMUST00000216546 910 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 AC154248.1-201ENSMUST00000222072 495 ntTSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 CT009711.2-201ENSMUST00000225352 934 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 AC132260.1-201ENSMUST00000225499 734 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Tns4-201ENSMUST00000017751 4755 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Emsy-207ENSMUST00000205911 5079 ntTSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 AC154406.1-201ENSMUST00000215220 2529 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Matr3-205ENSMUST00000186796 1854 ntTSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Slc26a5-202ENSMUST00000115176 2768 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Vmn1r218-202ENSMUST00000226692 10430 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Asb4-201ENSMUST00000043294 3286 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Nr3c2-201ENSMUST00000034031 2955 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Olfr1278-203ENSMUST00000213727 6744 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Cyp2c68-201ENSMUST00000099472 1724 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm21284-201ENSMUST00000205532 3736 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Asap1-208ENSMUST00000176014 3435 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm13872-202ENSMUST00000143995 1408 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 BC064078-202ENSMUST00000131176 2299 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Gm38381-201ENSMUST00000193594 2275 ntBASIC7.1□□□□□ -1.27
Upf3bQ3ULL6 Srrm4os-201ENSMUST00000126959 3360 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm26530-201ENSMUST00000180969 3941 ntTSL 5 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Pole2-202ENSMUST00000221411 1641 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Serpina7-202ENSMUST00000060824 1895 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Cntrl-204ENSMUST00000113033 1817 ntTSL 5 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Tnr-202ENSMUST00000192069 12202 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Tmem56-201ENSMUST00000029777 6248 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Pcdh15-217ENSMUST00000134009 3300 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Nmur2-201ENSMUST00000037682 3302 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm5578-201ENSMUST00000121490 1236 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm12540-201ENSMUST00000121938 319 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm12175-201ENSMUST00000122081 345 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 St8sia3os-203ENSMUST00000127716 667 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Prlr-204ENSMUST00000128450 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 1700061H18Rik-201ENSMUST00000139488 634 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Vmn1r29-201ENSMUST00000168416 1023 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm9285-201ENSMUST00000177691 697 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm21761-201ENSMUST00000179502 516 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm27299-201ENSMUST00000184593 103 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Scgb1b5-ps-201ENSMUST00000189491 280 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm37883-201ENSMUST00000194970 725 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm42707-202ENSMUST00000196668 618 ntTSL 3 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Ighv1-73-201ENSMUST00000197435 352 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Akr1c13-201ENSMUST00000021634 1262 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 AC165349.1-201ENSMUST00000217896 424 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm7441-201ENSMUST00000220697 1074 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Zp4-ps-202ENSMUST00000222293 922 ntTSL 3 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Pifo-202ENSMUST00000066319 899 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Mir425-201ENSMUST00000083645 85 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Olfr119-201ENSMUST00000080483 1541 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Tial1-211ENSMUST00000165023 2003 ntAPPRIS ALT1 TSL 5 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Sh2d1b2-202ENSMUST00000162752 2542 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Adam3-209ENSMUST00000171438 2501 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Gm45297-201ENSMUST00000209893 3483 ntBASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Depdc1a-202ENSMUST00000106041 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Upf3bQ3ULL6 Olfr1364-202ENSMUST00000206526 2938 ntAPPRIS P1 TSL 3 BASIC7.09□□□□□ -1.27
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms