Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 CT030185.1-201ENSMUST00000222940 2289 ntBASIC10.25□□□□□ -0.77
Cux1P53564 Gm36527-201ENSMUST00000195500 3029 ntBASIC10.25□□□□□ -0.77
Cux1P53564 Gm13930-201ENSMUST00000118569 368 ntBASIC10.25□□□□□ -0.77
Cux1P53564 Fam229b-202ENSMUST00000124941 721 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Gm21560-202ENSMUST00000177670 618 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cux1P53564 Gm3269-202ENSMUST00000178137 618 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cux1P53564 Gm3099-202ENSMUST00000178274 618 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cux1P53564 Gm3642-202ENSMUST00000179296 618 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cux1P53564 Gm3594-203ENSMUST00000179747 618 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cux1P53564 4921513I08Rik-201ENSMUST00000206993 866 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Mylf-ps-201ENSMUST00000222174 421 ntBASIC10.25□□□□□ -0.77
Cux1P53564 Erg-202ENSMUST00000113846 3249 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Gm37790-201ENSMUST00000193136 3346 ntBASIC10.25□□□□□ -0.77
Cux1P53564 Gm2223-201ENSMUST00000112099 1350 ntBASIC10.25□□□□□ -0.77
Cux1P53564 Pcdh15-208ENSMUST00000125006 4863 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Pcdh15-232ENSMUST00000177420 4878 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Mphosph9-211ENSMUST00000184951 5008 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cux1P53564 Csde1-214ENSMUST00000199240 3457 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Tnik-203ENSMUST00000159680 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Hdlbp-202ENSMUST00000170883 6231 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cux1P53564 Cd59a-203ENSMUST00000168176 1806 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
Cux1P53564 Errfi1-202ENSMUST00000073600 3036 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Bcas3os1-202ENSMUST00000151652 3138 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Rtel1-205ENSMUST00000108815 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Gm10826-201ENSMUST00000215366 3304 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm45221-201ENSMUST00000207822 2272 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Efcab5-201ENSMUST00000108400 4654 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cux1P53564 Plxna4-201ENSMUST00000115096 12877 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Tmigd3-201ENSMUST00000010279 900 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Ppp1r1c-203ENSMUST00000111780 708 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Gm13207-201ENSMUST00000119862 773 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm14300-201ENSMUST00000120800 946 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm12107-201ENSMUST00000132857 889 ntTSL 5 BASIC10.24□□□□□ -0.77
Cux1P53564 Bloc1s6os-201ENSMUST00000150154 696 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Gm25363-201ENSMUST00000158850 245 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm18199-201ENSMUST00000173820 835 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm18191-201ENSMUST00000174624 824 ntBASIC10.24□□□□□ -0.77
Cux1P53564 D630011A20Rik-201ENSMUST00000180858 500 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Gm29050-202ENSMUST00000190865 502 ntTSL 2 BASIC10.24□□□□□ -0.77
Cux1P53564 Gm6525-201ENSMUST00000193882 1029 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cux1P53564 Gm38133-201ENSMUST00000195109 815 ntTSL 5 BASIC10.24□□□□□ -0.77
Cux1P53564 Gm43160-201ENSMUST00000196453 421 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm43382-201ENSMUST00000198954 838 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm31861-201ENSMUST00000204563 672 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Gm34066-201ENSMUST00000210156 825 ntTSL 5 BASIC10.24□□□□□ -0.77
Cux1P53564 AC154646.1-201ENSMUST00000225011 1092 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Cypt4-201ENSMUST00000053956 629 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cux1P53564 Gm44996-201ENSMUST00000208787 2980 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Vmn1r8-202ENSMUST00000227706 1563 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cux1P53564 Olfr544-201ENSMUST00000051201 3270 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Cux1P53564 Zfp14-203ENSMUST00000207873 3411 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Gm26744-201ENSMUST00000181834 1731 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Polr1a-201ENSMUST00000055296 9216 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Slc17a4-202ENSMUST00000110407 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 AC135119.1-202ENSMUST00000228435 2203 ntBASIC10.24□□□□□ -0.77
Cux1P53564 Ankef1-210ENSMUST00000180246 2726 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cux1P53564 Dclre1b-204ENSMUST00000106834 3705 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cux1P53564 Gm33326-201ENSMUST00000209741 3815 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cux1P53564 Vmn1r26-203ENSMUST00000228070 4419 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cux1P53564 Olfr1414-201ENSMUST00000062353 6017 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Cux1P53564 C87499-202ENSMUST00000107142 672 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
Cux1P53564 Gm15194-201ENSMUST00000120453 434 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm14935-201ENSMUST00000121528 1708 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm13872-202ENSMUST00000143995 1408 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Dcn-202ENSMUST00000163448 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 1700024B05Rik-202ENSMUST00000168972 1573 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cux1P53564 Mir6952-201ENSMUST00000185092 61 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Tgif1-211ENSMUST00000186358 1455 ntTSL 3 BASIC10.23□□□□□ -0.77
Cux1P53564 1700124L16Rik-202ENSMUST00000189308 546 ntTSL 5 BASIC10.23□□□□□ -0.77
Cux1P53564 Gm37234-201ENSMUST00000193259 1441 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm7343-201ENSMUST00000194510 1061 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm44221-201ENSMUST00000203552 388 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Oxtr-202ENSMUST00000204027 3721 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Mat2a-206ENSMUST00000206692 1400 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Gm18467-201ENSMUST00000208805 434 ntBASIC10.23□□□□□ -0.77
Cux1P53564 AC132954.2-201ENSMUST00000222400 403 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Ppp1r7-201ENSMUST00000027494 10315 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Pmfbp1-201ENSMUST00000034162 3396 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Olfr726-201ENSMUST00000072370 966 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cux1P53564 Nlrp3-201ENSMUST00000079476 3933 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Fmo5-203ENSMUST00000107050 5197 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Itgae-201ENSMUST00000006101 3845 ntAPPRIS P4 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Agtpbp1-202ENSMUST00000109830 2879 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Gm13081-201ENSMUST00000121527 5599 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm37725-201ENSMUST00000193965 2125 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Pcdh15-226ENSMUST00000151116 6287 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cux1P53564 Elavl2-209ENSMUST00000107124 4127 ntAPPRIS ALT1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Gm10693-201ENSMUST00000144146 2037 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Olfr458-202ENSMUST00000216650 1799 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cux1P53564 Gm44417-201ENSMUST00000203298 3359 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm37310-201ENSMUST00000195237 2968 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm14120-201ENSMUST00000129067 2869 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Gm28928-201ENSMUST00000187286 1443 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Bdnf-201ENSMUST00000053317 4266 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Ep400-204ENSMUST00000112436 10685 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Mup6-202ENSMUST00000107520 540 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cux1P53564 Gm15158-201ENSMUST00000120577 570 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Clec4a2-204ENSMUST00000161365 918 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cux1P53564 Rps16-ps3-201ENSMUST00000179126 441 ntBASIC10.23□□□□□ -0.77
Cux1P53564 Gm27255-201ENSMUST00000184303 529 ntTSL 3 BASIC10.23□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms