Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Gm38308-201ENSMUST00000194934 1809 ntBASIC21.85■■□□□ 1.09
Scn11aQ9R053 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn11aQ9R053 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
Scn11aQ9R053 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Gm43183-201ENSMUST00000200632 547 ntBASIC21.84■■□□□ 1.09
Scn11aQ9R053 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.84■■□□□ 1.09
Scn11aQ9R053 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Gm7856-201ENSMUST00000117514 1493 ntBASIC21.84■■□□□ 1.09
Scn11aQ9R053 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn11aQ9R053 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.83■■□□□ 1.09
Scn11aQ9R053 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Scn11aQ9R053 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Scn11aQ9R053 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Scn11aQ9R053 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Scn11aQ9R053 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Scn11aQ9R053 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Gm21814-202ENSMUST00000203277 873 ntBASIC21.82■■□□□ 1.08
Scn11aQ9R053 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
Scn11aQ9R053 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.82■■□□□ 1.08
Scn11aQ9R053 Arhgef4-208ENSMUST00000211073 171 ntBASIC21.82■■□□□ 1.08
Scn11aQ9R053 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Scn11aQ9R053 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.81■■□□□ 1.08
Scn11aQ9R053 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Scn11aQ9R053 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn11aQ9R053 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn11aQ9R053 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn11aQ9R053 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.8■■□□□ 1.08
Scn11aQ9R053 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn11aQ9R053 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn11aQ9R053 Gm10654-201ENSMUST00000098653 1633 ntBASIC21.8■■□□□ 1.08
Scn11aQ9R053 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn11aQ9R053 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Scn11aQ9R053 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Scn11aQ9R053 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
Scn11aQ9R053 Gm5417-201ENSMUST00000079706 384 ntBASIC21.79■■□□□ 1.08
Scn11aQ9R053 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Scn11aQ9R053 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Scn11aQ9R053 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Scn11aQ9R053 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
Scn11aQ9R053 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC21.78■■□□□ 1.08
Scn11aQ9R053 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
Scn11aQ9R053 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scn11aQ9R053 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scn11aQ9R053 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC21.78■■□□□ 1.08
Scn11aQ9R053 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scn11aQ9R053 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Scn11aQ9R053 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Scn11aQ9R053 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Gm6659-201ENSMUST00000174752 547 ntBASIC21.77■■□□□ 1.08
Scn11aQ9R053 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.77■■□□□ 1.08
Scn11aQ9R053 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.77■■□□□ 1.08
Scn11aQ9R053 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
Scn11aQ9R053 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms