Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Gm12527-201ENSMUST00000117967 564 ntBASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Gm20049-201ENSMUST00000219950 730 ntBASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vps28Q9D1C8 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Gm8309-201ENSMUST00000206627 1448 ntBASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Vps28Q9D1C8 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Gm10653-202ENSMUST00000139570 835 ntBASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vps28Q9D1C8 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Vps28Q9D1C8 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Gm44549-201ENSMUST00000208351 577 ntBASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vps28Q9D1C8 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Vps28Q9D1C8 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Vps28Q9D1C8 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Vps28Q9D1C8 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Vps28Q9D1C8 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Vps28Q9D1C8 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Vps28Q9D1C8 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Gm2559-201ENSMUST00000201323 363 ntBASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vps28Q9D1C8 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms