Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trim47Q8C0E3 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Gm11927-201ENSMUST00000118472 759 ntBASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Gm22240-201ENSMUST00000175225 82 ntBASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Gm8520-201ENSMUST00000186517 868 ntBASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim47Q8C0E3 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Flg-201ENSMUST00000050758 1488 ntBASIC20.24■□□□□ 0.83
Trim47Q8C0E3 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim47Q8C0E3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Gm5643-201ENSMUST00000117081 966 ntBASIC20.22■□□□□ 0.83
Trim47Q8C0E3 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Mtag2-201ENSMUST00000058665 714 ntBASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Gm21596-201ENSMUST00000178049 1316 ntBASIC20.22■□□□□ 0.83
Trim47Q8C0E3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim47Q8C0E3 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Zfp783-201ENSMUST00000095946 670 ntBASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Trim47Q8C0E3 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.2■□□□□ 0.82
Trim47Q8C0E3 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trim47Q8C0E3 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 AC163280.1-201ENSMUST00000228194 1100 ntBASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim47Q8C0E3 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim47Q8C0E3 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Trim47Q8C0E3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms