Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig4Q8BTF7 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Lig4Q8BTF7 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig4Q8BTF7 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig4Q8BTF7 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig4Q8BTF7 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Lig4Q8BTF7 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig4Q8BTF7 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Flg-201ENSMUST00000050758 1488 ntBASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig4Q8BTF7 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Gm8520-201ENSMUST00000186517 868 ntBASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig4Q8BTF7 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig4Q8BTF7 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Gm13168-201ENSMUST00000121771 632 ntBASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lig4Q8BTF7 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Gm11249-201ENSMUST00000117071 859 ntBASIC19.29■□□□□ 0.68
Lig4Q8BTF7 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.29■□□□□ 0.68
Lig4Q8BTF7 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lig4Q8BTF7 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms