Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Gm27405-201ENSMUST00000184201 112 ntBASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Gm7291-201ENSMUST00000199147 382 ntBASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp49Q6P9L4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.45■□□□□ 0.87
Usp49Q6P9L4 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp49Q6P9L4 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp49Q6P9L4 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.43■□□□□ 0.86
Usp49Q6P9L4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Tgds-204ENSMUST00000228543 1594 ntBASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Gm22325-201ENSMUST00000158904 308 ntBASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp49Q6P9L4 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp49Q6P9L4 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms