Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC23.89■■□□□ 1.41
Trim28Q62318 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
Trim28Q62318 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim28Q62318 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim28Q62318 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC23.88■■□□□ 1.41
Trim28Q62318 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Trim28Q62318 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Trim28Q62318 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim28Q62318 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Trim28Q62318 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim28Q62318 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Trim28Q62318 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Trim28Q62318 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim28Q62318 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim28Q62318 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
Trim28Q62318 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Trim28Q62318 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Trim28Q62318 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 AC166341.7-201ENSMUST00000221698 126 ntBASIC23.86■■□□□ 1.41
Trim28Q62318 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Trim28Q62318 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC23.86■■□□□ 1.41
Trim28Q62318 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim28Q62318 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim28Q62318 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Trim28Q62318 Gm37055-201ENSMUST00000191866 133 ntBASIC23.85■■□□□ 1.41
Trim28Q62318 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim28Q62318 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim28Q62318 Gm43213-201ENSMUST00000151866 1790 ntBASIC23.85■■□□□ 1.41
Trim28Q62318 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC23.84■■□□□ 1.41
Trim28Q62318 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Trim28Q62318 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC23.84■■□□□ 1.41
Trim28Q62318 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim28Q62318 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim28Q62318 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim28Q62318 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim28Q62318 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim28Q62318 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Trim28Q62318 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC23.83■■□□□ 1.41
Trim28Q62318 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC23.83■■□□□ 1.41
Trim28Q62318 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim28Q62318 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Trim28Q62318 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Trim28Q62318 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim28Q62318 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim28Q62318 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim28Q62318 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
Trim28Q62318 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC23.82■■□□□ 1.4
Trim28Q62318 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim28Q62318 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Trim28Q62318 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim28Q62318 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC23.81■■□□□ 1.4
Trim28Q62318 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 AC124581.1-201ENSMUST00000225416 1399 ntBASIC23.81■■□□□ 1.4
Trim28Q62318 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC23.81■■□□□ 1.4
Trim28Q62318 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
Trim28Q62318 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
Trim28Q62318 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC23.81■■□□□ 1.4
Trim28Q62318 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC23.81■■□□□ 1.4
Trim28Q62318 Gm21814-202ENSMUST00000203277 873 ntBASIC23.81■■□□□ 1.4
Trim28Q62318 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Trim28Q62318 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Trim28Q62318 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Trim28Q62318 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim28Q62318 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Trim28Q62318 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Trim28Q62318 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Trim28Q62318 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC23.8■■□□□ 1.4
Trim28Q62318 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Trim28Q62318 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Trim28Q62318 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms