Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col11a1Q61245 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC20.67■□□□□ 0.9
Col11a1Q61245 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col11a1Q61245 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col11a1Q61245 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col11a1Q61245 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col11a1Q61245 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col11a1Q61245 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.66■□□□□ 0.9
Col11a1Q61245 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.66■□□□□ 0.9
Col11a1Q61245 Gm22697-201ENSMUST00000175194 63 ntBASIC20.66■□□□□ 0.9
Col11a1Q61245 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col11a1Q61245 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
Col11a1Q61245 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 Gm28033-201ENSMUST00000184224 96 ntBASIC20.65■□□□□ 0.9
Col11a1Q61245 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC20.65■□□□□ 0.9
Col11a1Q61245 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Col11a1Q61245 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col11a1Q61245 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col11a1Q61245 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Col11a1Q61245 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col11a1Q61245 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col11a1Q61245 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col11a1Q61245 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.64■□□□□ 0.89
Col11a1Q61245 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.64■□□□□ 0.89
Col11a1Q61245 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.64■□□□□ 0.89
Col11a1Q61245 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col11a1Q61245 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Col11a1Q61245 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Col11a1Q61245 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col11a1Q61245 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col11a1Q61245 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
Col11a1Q61245 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col11a1Q61245 Gm16061-201ENSMUST00000122167 857 ntBASIC20.63■□□□□ 0.89
Col11a1Q61245 AC130713.1-201ENSMUST00000228853 1096 ntBASIC20.63■□□□□ 0.89
Col11a1Q61245 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Col11a1Q61245 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col11a1Q61245 Gm17661-201ENSMUST00000170317 270 ntBASIC20.62■□□□□ 0.89
Col11a1Q61245 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col11a1Q61245 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col11a1Q61245 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Col11a1Q61245 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col11a1Q61245 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col11a1Q61245 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
Col11a1Q61245 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Col11a1Q61245 Umpk-ps-201ENSMUST00000211897 827 ntBASIC20.62■□□□□ 0.89
Col11a1Q61245 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Col11a1Q61245 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col11a1Q61245 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.61■□□□□ 0.89
Col11a1Q61245 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Col11a1Q61245 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC20.61■□□□□ 0.89
Col11a1Q61245 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col11a1Q61245 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.61■□□□□ 0.89
Col11a1Q61245 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col11a1Q61245 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col11a1Q61245 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Col11a1Q61245 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col11a1Q61245 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Gm7370-201ENSMUST00000219471 767 ntBASIC20.6■□□□□ 0.89
Col11a1Q61245 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Gm7461-201ENSMUST00000058918 827 ntBASIC20.6■□□□□ 0.89
Col11a1Q61245 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col11a1Q61245 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Col11a1Q61245 Gm17807-201ENSMUST00000186869 298 ntBASIC20.6■□□□□ 0.89
Col11a1Q61245 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms