Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Wnt10b-205ENSMUST00000226846 1204 ntBASIC21.98■■□□□ 1.11
Vps54Q5SPW0 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps54Q5SPW0 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps54Q5SPW0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps54Q5SPW0 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps54Q5SPW0 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Vps54Q5SPW0 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Gm38308-201ENSMUST00000194934 1809 ntBASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps54Q5SPW0 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vps54Q5SPW0 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.11
Vps54Q5SPW0 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
Vps54Q5SPW0 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.95■■□□□ 1.11
Vps54Q5SPW0 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Gm20760-201ENSMUST00000179197 648 ntBASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Vps54Q5SPW0 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Vps54Q5SPW0 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Vps54Q5SPW0 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Gm11927-201ENSMUST00000118472 759 ntBASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Vps54Q5SPW0 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Vps54Q5SPW0 Flg-201ENSMUST00000050758 1488 ntBASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Gm21596-201ENSMUST00000178049 1316 ntBASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Vps54Q5SPW0 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Vps54Q5SPW0 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Vps54Q5SPW0 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Vps54Q5SPW0 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Vps54Q5SPW0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Vps54Q5SPW0 Mtag2-201ENSMUST00000058665 714 ntBASIC21.89■■□□□ 1.09
Vps54Q5SPW0 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Vps54Q5SPW0 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Vps54Q5SPW0 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
Vps54Q5SPW0 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Vps54Q5SPW0 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Vps54Q5SPW0 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Vps54Q5SPW0 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Vps54Q5SPW0 Gm13168-201ENSMUST00000121771 632 ntBASIC21.88■■□□□ 1.09
Vps54Q5SPW0 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Vps54Q5SPW0 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms