Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Gm45606-201ENSMUST00000209836 2795 ntBASIC14.68□□□□□ -0.06
Trav6-3Q5R1E6 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav6-3Q5R1E6 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Gm2011-201ENSMUST00000203124 1263 ntBASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 AC160393.1-201ENSMUST00000218378 1279 ntBASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav6-3Q5R1E6 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Tgds-204ENSMUST00000228543 1594 ntBASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav6-3Q5R1E6 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Gm42900-201ENSMUST00000197184 2167 ntBASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Gm13234-201ENSMUST00000120010 747 ntBASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 AC122335.2-201ENSMUST00000213901 6181 ntBASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav6-3Q5R1E6 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC14.63□□□□□ -0.07
Trav6-3Q5R1E6 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.63□□□□□ -0.07
Trav6-3Q5R1E6 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav6-3Q5R1E6 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav6-3Q5R1E6 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trav6-3Q5R1E6 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav6-3Q5R1E6 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms