Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col27a1Q5QNQ9 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
Col27a1Q5QNQ9 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Gm27357-201ENSMUST00000183754 135 ntBASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Mzt1-203ENSMUST00000227948 952 ntBASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Gm17808-201ENSMUST00000200859 894 ntBASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col27a1Q5QNQ9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Mir1668-201ENSMUST00000184114 107 ntBASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col27a1Q5QNQ9 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
Col27a1Q5QNQ9 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC17.79■□□□□ 0.44
Col27a1Q5QNQ9 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col27a1Q5QNQ9 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col27a1Q5QNQ9 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.77■□□□□ 0.43
Col27a1Q5QNQ9 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.77■□□□□ 0.43
Col27a1Q5QNQ9 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col27a1Q5QNQ9 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col27a1Q5QNQ9 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col27a1Q5QNQ9 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms