Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Nespas-201ENSMUST00000143738 1083 ntBASIC19.38■□□□□ 0.69
Syne3Q4FZC9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Syne3Q4FZC9 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Syne3Q4FZC9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Gm37179-201ENSMUST00000194862 823 ntBASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.36■□□□□ 0.69
Syne3Q4FZC9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne3Q4FZC9 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Syne3Q4FZC9 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne3Q4FZC9 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
Syne3Q4FZC9 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne3Q4FZC9 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.33■□□□□ 0.69
Syne3Q4FZC9 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne3Q4FZC9 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne3Q4FZC9 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms