Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig3P97386 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig3P97386 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.81■□□□□ 0.76
Lig3P97386 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.81■□□□□ 0.76
Lig3P97386 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.81■□□□□ 0.76
Lig3P97386 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Lig3P97386 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Lig3P97386 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.81■□□□□ 0.76
Lig3P97386 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig3P97386 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 Gm5643-201ENSMUST00000117081 966 ntBASIC19.8■□□□□ 0.76
Lig3P97386 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.8■□□□□ 0.76
Lig3P97386 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.8■□□□□ 0.76
Lig3P97386 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig3P97386 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.79■□□□□ 0.76
Lig3P97386 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Lig3P97386 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Gm715-201ENSMUST00000117865 831 ntBASIC19.79■□□□□ 0.76
Lig3P97386 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig3P97386 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.78■□□□□ 0.76
Lig3P97386 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig3P97386 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lig3P97386 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lig3P97386 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Lig3P97386 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Lig3P97386 Gm12896-201ENSMUST00000118430 226 ntBASIC19.77■□□□□ 0.76
Lig3P97386 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.77■□□□□ 0.76
Lig3P97386 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lig3P97386 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.77■□□□□ 0.75
Lig3P97386 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lig3P97386 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lig3P97386 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lig3P97386 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
Lig3P97386 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lig3P97386 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
Lig3P97386 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lig3P97386 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.76■□□□□ 0.75
Lig3P97386 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Lig3P97386 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.76■□□□□ 0.75
Lig3P97386 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig3P97386 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lig3P97386 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig3P97386 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig3P97386 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Lig3P97386 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.75■□□□□ 0.75
Lig3P97386 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.75■□□□□ 0.75
Lig3P97386 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Lig3P97386 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Lig3P97386 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lig3P97386 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.75■□□□□ 0.75
Lig3P97386 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.75■□□□□ 0.75
Lig3P97386 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig3P97386 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lig3P97386 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.74■□□□□ 0.75
Lig3P97386 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Lig3P97386 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.74■□□□□ 0.75
Lig3P97386 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
Lig3P97386 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms