Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.09■□□□□ 0.49
Shox2P70390 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shox2P70390 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Shox2P70390 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shox2P70390 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.08■□□□□ 0.49
Shox2P70390 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Shox2P70390 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Shox2P70390 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Shox2P70390 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shox2P70390 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shox2P70390 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.08■□□□□ 0.48
Shox2P70390 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.08■□□□□ 0.48
Shox2P70390 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Shox2P70390 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Shox2P70390 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Shox2P70390 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Shox2P70390 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Shox2P70390 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Shox2P70390 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Shox2P70390 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.07■□□□□ 0.48
Shox2P70390 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Shox2P70390 Mir6538-201ENSMUST00000183713 110 ntBASIC18.07■□□□□ 0.48
Shox2P70390 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Shox2P70390 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Shox2P70390 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.07■□□□□ 0.48
Shox2P70390 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Shox2P70390 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Shox2P70390 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Shox2P70390 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.06■□□□□ 0.48
Shox2P70390 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.06■□□□□ 0.48
Shox2P70390 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.06■□□□□ 0.48
Shox2P70390 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Shox2P70390 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Shox2P70390 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.05■□□□□ 0.48
Shox2P70390 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Shox2P70390 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.05■□□□□ 0.48
Shox2P70390 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Shox2P70390 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Shox2P70390 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC18.05■□□□□ 0.48
Shox2P70390 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Shox2P70390 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.05■□□□□ 0.48
Shox2P70390 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Shox2P70390 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.04■□□□□ 0.48
Shox2P70390 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.04■□□□□ 0.48
Shox2P70390 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.04■□□□□ 0.48
Shox2P70390 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.04■□□□□ 0.48
Shox2P70390 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.04■□□□□ 0.48
Shox2P70390 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Shox2P70390 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shox2P70390 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.03■□□□□ 0.48
Shox2P70390 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shox2P70390 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.03■□□□□ 0.48
Shox2P70390 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Shox2P70390 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Shox2P70390 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms