Protein–RNA interactions for Protein: P54729

Nub1, NEDD8 ultimate buster 1, mousemouse

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nub1P54729 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nub1P54729 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Nub1P54729 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Nub1P54729 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Nub1P54729 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Nub1P54729 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Nub1P54729 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nub1P54729 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Nub1P54729 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Nub1P54729 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nub1P54729 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nub1P54729 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Nub1P54729 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.63■□□□□ 0.73
Nub1P54729 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Nub1P54729 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nub1P54729 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Nub1P54729 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Nub1P54729 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.63■□□□□ 0.73
Nub1P54729 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nub1P54729 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nub1P54729 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Nub1P54729 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.62■□□□□ 0.73
Nub1P54729 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Nub1P54729 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nub1P54729 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Nub1P54729 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Nub1P54729 Gm10602-201ENSMUST00000098239 609 ntBASIC19.62■□□□□ 0.73
Nub1P54729 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Nub1P54729 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nub1P54729 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.61■□□□□ 0.73
Nub1P54729 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.61■□□□□ 0.73
Nub1P54729 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Nub1P54729 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
Nub1P54729 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Nub1P54729 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.61■□□□□ 0.73
Nub1P54729 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nub1P54729 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Nub1P54729 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Nub1P54729 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Nub1P54729 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.6■□□□□ 0.73
Nub1P54729 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nub1P54729 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Nub1P54729 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Nub1P54729 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Nub1P54729 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.59■□□□□ 0.73
Nub1P54729 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.59■□□□□ 0.73
Nub1P54729 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Nub1P54729 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Nub1P54729 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Nub1P54729 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Nub1P54729 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Nub1P54729 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 Gm29257-201ENSMUST00000186115 639 ntBASIC19.58■□□□□ 0.72
Nub1P54729 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Nub1P54729 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Nub1P54729 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Nub1P54729 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nub1P54729 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Nub1P54729 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Gm26524-201ENSMUST00000192339 390 ntBASIC19.57■□□□□ 0.72
Nub1P54729 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nub1P54729 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms