Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.34■□□□□ 0.69
Shmt1P50431 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.34■□□□□ 0.69
Shmt1P50431 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shmt1P50431 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Shmt1P50431 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Shmt1P50431 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shmt1P50431 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shmt1P50431 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shmt1P50431 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shmt1P50431 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shmt1P50431 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shmt1P50431 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shmt1P50431 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Shmt1P50431 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.33■□□□□ 0.68
Shmt1P50431 Gm13168-201ENSMUST00000121771 632 ntBASIC19.33■□□□□ 0.68
Shmt1P50431 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Shmt1P50431 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shmt1P50431 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shmt1P50431 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Shmt1P50431 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shmt1P50431 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Shmt1P50431 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.33■□□□□ 0.68
Shmt1P50431 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.32■□□□□ 0.68
Shmt1P50431 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Shmt1P50431 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.32■□□□□ 0.68
Shmt1P50431 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.32■□□□□ 0.68
Shmt1P50431 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.32■□□□□ 0.68
Shmt1P50431 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shmt1P50431 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Shmt1P50431 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.31■□□□□ 0.68
Shmt1P50431 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.31■□□□□ 0.68
Shmt1P50431 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shmt1P50431 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Shmt1P50431 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Shmt1P50431 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Shmt1P50431 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.3■□□□□ 0.68
Shmt1P50431 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.3■□□□□ 0.68
Shmt1P50431 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shmt1P50431 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Shmt1P50431 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shmt1P50431 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.28■□□□□ 0.68
Shmt1P50431 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Shmt1P50431 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Gm11927-201ENSMUST00000118472 759 ntBASIC19.28■□□□□ 0.68
Shmt1P50431 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.28■□□□□ 0.68
Shmt1P50431 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Shmt1P50431 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Shmt1P50431 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Shmt1P50431 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.27■□□□□ 0.68
Shmt1P50431 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Shmt1P50431 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.27■□□□□ 0.68
Shmt1P50431 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shmt1P50431 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.27■□□□□ 0.68
Shmt1P50431 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Shmt1P50431 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.27■□□□□ 0.67
Shmt1P50431 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Shmt1P50431 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shmt1P50431 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms