Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Gm12933-201ENSMUST00000120203 872 ntBASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp6P0C0A3 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp6P0C0A3 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp6P0C0A3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Gm7290-201ENSMUST00000104990 617 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Gm12918-201ENSMUST00000120234 636 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Gm15710-201ENSMUST00000121821 636 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Gm5075-201ENSMUST00000196916 622 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.81■□□□□ 0.76
Chmp6P0C0A3 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp6P0C0A3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp6P0C0A3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms