Protein–RNA interactions for Protein: D3YZU1

Shank1, SH3 and multiple ankyrin repeat domains protein 1, mousemouse

Predictions only

Length 2,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shank1D3YZU1 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Shank1D3YZU1 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.33■□□□□ 0.2
Shank1D3YZU1 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Shank1D3YZU1 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Shank1D3YZU1 Gm10013-201ENSMUST00000106074 672 ntBASIC16.33■□□□□ 0.2
Shank1D3YZU1 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Hsf1-207ENSMUST00000228371 2102 ntBASIC16.32■□□□□ 0.2
Shank1D3YZU1 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shank1D3YZU1 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.31■□□□□ 0.2
Shank1D3YZU1 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.31■□□□□ 0.2
Shank1D3YZU1 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.31■□□□□ 0.2
Shank1D3YZU1 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shank1D3YZU1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Gm10138-203ENSMUST00000206952 366 ntBASIC16.3■□□□□ 0.2
Shank1D3YZU1 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Shank1D3YZU1 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Shank1D3YZU1 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Shank1D3YZU1 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Gm5540-201ENSMUST00000131852 1848 ntBASIC16.29■□□□□ 0.2
Shank1D3YZU1 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Shank1D3YZU1 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Gm18959-201ENSMUST00000208954 655 ntBASIC16.28■□□□□ 0.2
Shank1D3YZU1 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Shank1D3YZU1 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.27■□□□□ 0.2
Shank1D3YZU1 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Shank1D3YZU1 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Shank1D3YZU1 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
Shank1D3YZU1 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Shank1D3YZU1 Gm33142-201ENSMUST00000193913 867 ntBASIC16.27■□□□□ 0.19
Shank1D3YZU1 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.27■□□□□ 0.19
Shank1D3YZU1 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Shank1D3YZU1 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms