Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trav4-3A0A0B4J1K1 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav4-3A0A0B4J1K1 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gm43566-201ENSMUST00000196851 808 ntBASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gm43759-201ENSMUST00000196925 1261 ntBASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gm43808-201ENSMUST00000202534 2065 ntBASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav4-3A0A0B4J1K1 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC12.46□□□□□ -0.41
Trav4-3A0A0B4J1K1 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Trav4-3A0A0B4J1K1 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav4-3A0A0B4J1K1 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.42
Trav4-3A0A0B4J1K1 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav4-3A0A0B4J1K1 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav4-3A0A0B4J1K1 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav4-3A0A0B4J1K1 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav4-3A0A0B4J1K1 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav4-3A0A0B4J1K1 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav4-3A0A0B4J1K1 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms