Protein–RNA interactions for Protein: A0A0B4J1H0

Trbv12-1, T cell receptor beta, variable 12-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv12-1A0A0B4J1H0 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Flg-201ENSMUST00000050758 1488 ntBASIC16.16■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Gm12441-201ENSMUST00000121806 588 ntBASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Zfp783-201ENSMUST00000095946 670 ntBASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trbv12-1A0A0B4J1H0 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.13■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Gm2559-201ENSMUST00000201323 363 ntBASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Dio3-201ENSMUST00000097228 1449 ntBASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv12-1A0A0B4J1H0 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms