Protein–RNA interactions for Protein: A0A075B621

Trav6n-5, T cell receptor alpha variable 6N-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6n-5A0A075B621 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav6n-5A0A075B621 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav6n-5A0A075B621 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav6n-5A0A075B621 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Gm10209-201ENSMUST00000203397 1607 ntBASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav6n-5A0A075B621 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Trav6n-5A0A075B621 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav6n-5A0A075B621 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav6n-5A0A075B621 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trav6n-5A0A075B621 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trav6n-5A0A075B621 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav6n-5A0A075B621 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav6n-5A0A075B621 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav6n-5A0A075B621 AC121961.1-201ENSMUST00000218594 1779 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms