Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Musk-202ENSMUST00000084578 3347 ntAPPRIS P2 TSL 5 BASIC8.98□□□□□ -0.97
Col18a1P39061 Olfr1380-202ENSMUST00000215360 2498 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
Col18a1P39061 5330411O13Rik-201ENSMUST00000205759 1544 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Gm38416-201ENSMUST00000209648 3565 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Mmp10-201ENSMUST00000034488 1722 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Cd59a-203ENSMUST00000168176 1806 ntAPPRIS P1 TSL 2 BASIC8.98□□□□□ -0.97
Col18a1P39061 Saa4-201ENSMUST00000006952 2094 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Psg17-201ENSMUST00000004655 2100 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Mapkbp1-201ENSMUST00000066058 6942 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Clasp1-214ENSMUST00000189570 5502 ntAPPRIS ALT2 TSL 5 BASIC8.98□□□□□ -0.97
Col18a1P39061 Wdhd1-204ENSMUST00000187531 4260 ntAPPRIS P5 TSL 5 BASIC8.98□□□□□ -0.97
Col18a1P39061 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Zfp459-201ENSMUST00000056470 3334 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Gm38811-201ENSMUST00000203781 3478 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Mrps36-ps2-201ENSMUST00000118658 309 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm16074-201ENSMUST00000119524 444 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm13224-201ENSMUST00000119586 94 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Rps13-ps6-201ENSMUST00000120038 428 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm15787-203ENSMUST00000130892 1250 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Gm13528-201ENSMUST00000139288 410 ntTSL 2 BASIC8.98□□□□□ -0.97
Col18a1P39061 1700047A11Rik-201ENSMUST00000144750 427 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Gm6472-201ENSMUST00000178147 651 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm6931-201ENSMUST00000183103 371 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm28847-201ENSMUST00000186778 700 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm8869-201ENSMUST00000195222 947 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm42912-201ENSMUST00000197195 716 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Klk1b10-ps-201ENSMUST00000205895 783 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 4930529N20Rik-201ENSMUST00000220538 639 ntTSL 3 BASIC8.98□□□□□ -0.97
Col18a1P39061 AC118006.2-201ENSMUST00000224167 962 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 AC122393.2-201ENSMUST00000226404 1093 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm23330-201ENSMUST00000082660 164 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Gm37139-201ENSMUST00000192134 4419 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Slc17a4-202ENSMUST00000110407 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Vmn2r98-201ENSMUST00000170424 2574 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
Col18a1P39061 Gm43890-201ENSMUST00000203437 2799 ntBASIC8.98□□□□□ -0.97
Col18a1P39061 Ddb1-201ENSMUST00000025649 4155 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Col18a1P39061 Calcr-205ENSMUST00000171613 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm17354-201ENSMUST00000170933 3039 ntTSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Zdhhc9-202ENSMUST00000088935 2815 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Trpm1-201ENSMUST00000085222 5711 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm33843-201ENSMUST00000219313 1637 ntTSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm17540-201ENSMUST00000181617 1528 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Iars-201ENSMUST00000047363 4396 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Ptprb-203ENSMUST00000218553 7016 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Slc1a3-201ENSMUST00000005493 4163 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Lrrtm3-201ENSMUST00000105439 3896 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm12656-201ENSMUST00000118149 577 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Gm23259-201ENSMUST00000158318 303 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Gm25065-201ENSMUST00000177914 132 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Gm25891-201ENSMUST00000180050 132 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 1700101I11Rik-201ENSMUST00000181594 896 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 1700108J01Rik-201ENSMUST00000187423 484 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm6631-201ENSMUST00000193699 559 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Gm3544-201ENSMUST00000196129 305 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 4930595O18Rik-201ENSMUST00000205099 607 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Gm35453-201ENSMUST00000210304 331 ntTSL 3 BASIC8.97□□□□□ -0.97
Col18a1P39061 AC165092.4-201ENSMUST00000225025 679 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 AC159979.1-201ENSMUST00000227927 342 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Olfr1039-201ENSMUST00000099910 960 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
Col18a1P39061 Gria1-202ENSMUST00000094179 5399 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm21655-202ENSMUST00000199295 2975 ntTSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm21680-201ENSMUST00000200447 2975 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Rreb1-207ENSMUST00000128570 8436 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm37518-201ENSMUST00000194930 2603 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Gm38322-201ENSMUST00000194074 2300 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Prepl-202ENSMUST00000171795 3830 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Tcf7l2-201ENSMUST00000041717 3590 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Zfp935-204ENSMUST00000223247 1949 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm43421-201ENSMUST00000200044 2905 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Epha7-202ENSMUST00000080934 2880 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Qsox2-202ENSMUST00000091263 4011 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Erich3-202ENSMUST00000098496 8280 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Rpgr-201ENSMUST00000044598 3805 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Bmpr2-201ENSMUST00000087435 12899 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Gm38003-201ENSMUST00000191968 1504 ntTSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 A530076I17Rik-202ENSMUST00000228352 1524 ntBASIC8.97□□□□□ -0.97
Col18a1P39061 Tbc1d14-201ENSMUST00000031094 4590 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 6030443J06Rik-203ENSMUST00000181764 4299 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 E330034G19Rik-204ENSMUST00000162224 1350 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Arhgap17-211ENSMUST00000207010 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Col18a1P39061 Ppp2r3a-202ENSMUST00000075941 6786 ntTSL 5 BASIC8.97□□□□□ -0.97
Col18a1P39061 Mtus1-201ENSMUST00000051379 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
Col18a1P39061 Gm4994-201ENSMUST00000118379 2187 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Zfp971-201ENSMUST00000108925 923 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Col18a1P39061 Gm22103-201ENSMUST00000116733 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm26475-201ENSMUST00000116769 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm23620-201ENSMUST00000116812 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm25042-201ENSMUST00000116856 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm25540-201ENSMUST00000116880 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm8692-201ENSMUST00000118102 438 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm11852-201ENSMUST00000120806 222 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm14905-201ENSMUST00000122351 639 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm12569-202ENSMUST00000126189 796 ntTSL 5 BASIC8.96□□□□□ -0.97
Col18a1P39061 Gm15882-201ENSMUST00000161344 855 ntTSL 3 BASIC8.96□□□□□ -0.97
Col18a1P39061 Gm6401-202ENSMUST00000164232 618 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
Col18a1P39061 Gm17079-201ENSMUST00000167231 666 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.97
Col18a1P39061 Gm23550-201ENSMUST00000179003 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm25123-201ENSMUST00000179154 121 ntBASIC8.96□□□□□ -0.97
Col18a1P39061 Gm25353-201ENSMUST00000179366 121 ntBASIC8.96□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 85.9 ms