Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Gm27011-201ENSMUST00000182352 972 ntBASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vps28Q9D1C8 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 BC021767-201ENSMUST00000126387 1716 ntBASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vps28Q9D1C8 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vps28Q9D1C8 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Vps28Q9D1C8 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Vps28Q9D1C8 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.71■□□□□ 0.58
Vps28Q9D1C8 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vps28Q9D1C8 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms