Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx56Q9D0R4 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.23■□□□□ 0.67
Ddx56Q9D0R4 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx56Q9D0R4 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Gm22325-201ENSMUST00000158904 308 ntBASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddx56Q9D0R4 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Gm7290-201ENSMUST00000104990 617 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Gm12918-201ENSMUST00000120234 636 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Gm15710-201ENSMUST00000121821 636 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Gm5075-201ENSMUST00000196916 622 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddx56Q9D0R4 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddx56Q9D0R4 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms