Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdk5rap3Q99LM2 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdk5rap3Q99LM2 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdk5rap3Q99LM2 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Cdk5rap3Q99LM2 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdk5rap3Q99LM2 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
Cdk5rap3Q99LM2 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Cdk5rap3Q99LM2 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Cdk5rap3Q99LM2 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdk5rap3Q99LM2 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdk5rap3Q99LM2 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Cdk5rap3Q99LM2 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdk5rap3Q99LM2 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Cdk5rap3Q99LM2 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms