Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clp1Q99LI9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clp1Q99LI9 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clp1Q99LI9 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.42■□□□□ 0.7
Clp1Q99LI9 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.42■□□□□ 0.7
Clp1Q99LI9 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clp1Q99LI9 Gm10819-201ENSMUST00000099988 561 ntBASIC19.42■□□□□ 0.7
Clp1Q99LI9 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Clp1Q99LI9 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clp1Q99LI9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.41■□□□□ 0.7
Clp1Q99LI9 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.41■□□□□ 0.7
Clp1Q99LI9 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.4■□□□□ 0.7
Clp1Q99LI9 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clp1Q99LI9 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Clp1Q99LI9 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Clp1Q99LI9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clp1Q99LI9 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clp1Q99LI9 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.38■□□□□ 0.69
Clp1Q99LI9 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clp1Q99LI9 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clp1Q99LI9 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clp1Q99LI9 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clp1Q99LI9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clp1Q99LI9 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.37■□□□□ 0.69
Clp1Q99LI9 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Clp1Q99LI9 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clp1Q99LI9 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clp1Q99LI9 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clp1Q99LI9 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.36■□□□□ 0.69
Clp1Q99LI9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clp1Q99LI9 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms