Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Gm5408-201ENSMUST00000197998 747 ntBASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Smarca1Q6PGB8 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Smarca1Q6PGB8 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Smarca1Q6PGB8 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Smarca1Q6PGB8 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Smarca1Q6PGB8 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarca1Q6PGB8 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smarca1Q6PGB8 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Smarca1Q6PGB8 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarca1Q6PGB8 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarca1Q6PGB8 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Gm26524-201ENSMUST00000192339 390 ntBASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarca1Q6PGB8 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms