Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp49Q6P9L4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp49Q6P9L4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp49Q6P9L4 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Usp49Q6P9L4 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Usp49Q6P9L4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp49Q6P9L4 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp49Q6P9L4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.52■□□□□ 0.88
Usp49Q6P9L4 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Usp49Q6P9L4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Usp49Q6P9L4 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.52■□□□□ 0.87
Usp49Q6P9L4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
Usp49Q6P9L4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Gm6365-201ENSMUST00000054711 744 ntBASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp49Q6P9L4 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp49Q6P9L4 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp49Q6P9L4 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp49Q6P9L4 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms