Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.52■□□□□ 0.56
Six4Q61321 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six4Q61321 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Six4Q61321 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six4Q61321 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.52■□□□□ 0.56
Six4Q61321 Gm4968-201ENSMUST00000071458 858 ntBASIC18.52■□□□□ 0.56
Six4Q61321 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six4Q61321 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six4Q61321 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six4Q61321 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six4Q61321 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.51■□□□□ 0.55
Six4Q61321 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Six4Q61321 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.51■□□□□ 0.55
Six4Q61321 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six4Q61321 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.51■□□□□ 0.55
Six4Q61321 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six4Q61321 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
Six4Q61321 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Six4Q61321 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Six4Q61321 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.5■□□□□ 0.55
Six4Q61321 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.5■□□□□ 0.55
Six4Q61321 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.5■□□□□ 0.55
Six4Q61321 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC18.5■□□□□ 0.55
Six4Q61321 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.5■□□□□ 0.55
Six4Q61321 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Six4Q61321 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Six4Q61321 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six4Q61321 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Six4Q61321 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six4Q61321 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six4Q61321 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.49■□□□□ 0.55
Six4Q61321 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.49■□□□□ 0.55
Six4Q61321 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.49■□□□□ 0.55
Six4Q61321 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six4Q61321 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six4Q61321 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Six4Q61321 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six4Q61321 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Six4Q61321 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.48■□□□□ 0.55
Six4Q61321 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.48■□□□□ 0.55
Six4Q61321 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Six4Q61321 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Six4Q61321 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six4Q61321 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.47■□□□□ 0.55
Six4Q61321 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.47■□□□□ 0.55
Six4Q61321 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.47■□□□□ 0.55
Six4Q61321 Gm44549-201ENSMUST00000208351 577 ntBASIC18.47■□□□□ 0.55
Six4Q61321 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.47■□□□□ 0.55
Six4Q61321 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.47■□□□□ 0.55
Six4Q61321 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.47■□□□□ 0.55
Six4Q61321 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six4Q61321 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Six4Q61321 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.46■□□□□ 0.55
Six4Q61321 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.46■□□□□ 0.55
Six4Q61321 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Six4Q61321 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.46■□□□□ 0.55
Six4Q61321 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Six4Q61321 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
Six4Q61321 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six4Q61321 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Six4Q61321 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six4Q61321 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.45■□□□□ 0.54
Six4Q61321 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six4Q61321 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
Six4Q61321 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms