Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.11■□□□□ 0.81
CtcfQ61164 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CtcfQ61164 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Gm9988-201ENSMUST00000069786 435 ntBASIC20.11■□□□□ 0.81
CtcfQ61164 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.11■□□□□ 0.81
CtcfQ61164 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.11■□□□□ 0.81
CtcfQ61164 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.11■□□□□ 0.81
CtcfQ61164 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CtcfQ61164 Reep4-203ENSMUST00000226563 1444 ntBASIC20.1■□□□□ 0.81
CtcfQ61164 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.1■□□□□ 0.81
CtcfQ61164 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.1■□□□□ 0.81
CtcfQ61164 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.1■□□□□ 0.81
CtcfQ61164 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CtcfQ61164 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CtcfQ61164 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.09■□□□□ 0.81
CtcfQ61164 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.09■□□□□ 0.81
CtcfQ61164 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CtcfQ61164 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CtcfQ61164 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CtcfQ61164 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CtcfQ61164 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CtcfQ61164 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CtcfQ61164 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CtcfQ61164 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.08■□□□□ 0.81
CtcfQ61164 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
CtcfQ61164 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CtcfQ61164 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CtcfQ61164 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CtcfQ61164 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CtcfQ61164 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CtcfQ61164 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CtcfQ61164 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.07■□□□□ 0.8
CtcfQ61164 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.07■□□□□ 0.8
CtcfQ61164 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CtcfQ61164 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.07■□□□□ 0.8
CtcfQ61164 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CtcfQ61164 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CtcfQ61164 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.06■□□□□ 0.8
CtcfQ61164 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
CtcfQ61164 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CtcfQ61164 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.06■□□□□ 0.8
CtcfQ61164 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CtcfQ61164 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CtcfQ61164 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
CtcfQ61164 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CtcfQ61164 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.05■□□□□ 0.8
CtcfQ61164 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.05■□□□□ 0.8
CtcfQ61164 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.05■□□□□ 0.8
CtcfQ61164 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Gm15039-201ENSMUST00000118914 875 ntBASIC20.05■□□□□ 0.8
CtcfQ61164 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms