Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Cln3Q61124 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.22■□□□□ 0.83
Cln3Q61124 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.22■□□□□ 0.83
Cln3Q61124 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 Gm7712-202ENSMUST00000222331 1510 ntBASIC20.22■□□□□ 0.83
Cln3Q61124 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cln3Q61124 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.21■□□□□ 0.83
Cln3Q61124 Gm11539-201ENSMUST00000119837 557 ntBASIC20.21■□□□□ 0.83
Cln3Q61124 Gm13436-201ENSMUST00000120418 567 ntBASIC20.21■□□□□ 0.83
Cln3Q61124 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC20.21■□□□□ 0.83
Cln3Q61124 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.21■□□□□ 0.83
Cln3Q61124 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Cln3Q61124 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cln3Q61124 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.2■□□□□ 0.82
Cln3Q61124 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cln3Q61124 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Cln3Q61124 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cln3Q61124 Gm13559-201ENSMUST00000120476 863 ntBASIC20.2■□□□□ 0.82
Cln3Q61124 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.2■□□□□ 0.82
Cln3Q61124 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Cln3Q61124 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.2■□□□□ 0.82
Cln3Q61124 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cln3Q61124 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Cln3Q61124 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cln3Q61124 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Cln3Q61124 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cln3Q61124 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cln3Q61124 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cln3Q61124 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.19■□□□□ 0.82
Cln3Q61124 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cln3Q61124 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cln3Q61124 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Cln3Q61124 Gm3375-201ENSMUST00000203929 796 ntBASIC20.18■□□□□ 0.82
Cln3Q61124 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Cln3Q61124 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.18■□□□□ 0.82
Cln3Q61124 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cln3Q61124 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Gm12382-201ENSMUST00000122005 922 ntBASIC20.17■□□□□ 0.82
Cln3Q61124 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.17■□□□□ 0.82
Cln3Q61124 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Cln3Q61124 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Cln3Q61124 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
Cln3Q61124 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.17■□□□□ 0.82
Cln3Q61124 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cln3Q61124 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Cln3Q61124 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Cln3Q61124 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Cln3Q61124 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.16■□□□□ 0.82
Cln3Q61124 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Odf3b-204ENSMUST00000227834 930 ntBASIC20.16■□□□□ 0.82
Cln3Q61124 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cln3Q61124 Mir6349-201ENSMUST00000184059 97 ntBASIC20.15■□□□□ 0.82
Cln3Q61124 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.15■□□□□ 0.82
Cln3Q61124 AC166341.7-201ENSMUST00000221698 126 ntBASIC20.15■□□□□ 0.82
Cln3Q61124 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cln3Q61124 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Cln3Q61124 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Cln3Q61124 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.15■□□□□ 0.82
Cln3Q61124 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cln3Q61124 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cln3Q61124 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Cln3Q61124 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Cln3Q61124 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Cln3Q61124 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cln3Q61124 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cln3Q61124 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cln3Q61124 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cln3Q61124 Gm10654-201ENSMUST00000098653 1633 ntBASIC20.14■□□□□ 0.81
Cln3Q61124 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cln3Q61124 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms