Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Col27a1Q5QNQ9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.91■□□□□ 0.46
Col27a1Q5QNQ9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Gm7370-201ENSMUST00000219471 767 ntBASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col27a1Q5QNQ9 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC17.89■□□□□ 0.46
Col27a1Q5QNQ9 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
Col27a1Q5QNQ9 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col27a1Q5QNQ9 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col27a1Q5QNQ9 Gm25925-201ENSMUST00000158314 306 ntBASIC17.89■□□□□ 0.45
Col27a1Q5QNQ9 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col27a1Q5QNQ9 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.87■□□□□ 0.45
Col27a1Q5QNQ9 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Gm29518-201ENSMUST00000190858 372 ntBASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col27a1Q5QNQ9 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col27a1Q5QNQ9 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col27a1Q5QNQ9 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms